J3_8URM_024

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8URM|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8URM_024 not in the Motif Atlas

Geometric match to J3_4WF9_005

Geometric discrepancy: 0.3192

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

8URM|1|2|C|826
8URM|1|2|U|827
8URM|1|2|U|828
8URM|1|2|G|829
*
8URM|1|2|C|857
8URM|1|2|G|858
8URM|1|2|G|859
8URM|1|2|A|860
8URM|1|2|G|861
*
8URM|1|2|C|868
8URM|1|2|G|869
8URM|1|2|U|870
8URM|1|2|U|871
8URM|1|2|A|872
8URM|1|2|A|873
8URM|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

Small ribosomal subunit protein uS8

Chain z

30S ribosomal protein S21