J3_8URM_025

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8URM_025 not in the Motif Atlas

Geometric match to J3_4LFB_002

Geometric discrepancy: 0.0815

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8URM|1|2|C|936
8URM|1|2|A|937
8URM|1|2|A|938
8URM|1|2|G|939
*
8URM|1|2|C|1344
8URM|1|2|U|1345
8URM|1|2|A|1346
8URM|1|2|G|1347
8URM|1|2|U|1348
8URM|1|2|A|1349
8URM|1|2|A|1350
*
8URM|1|2|U|1372
8URM|1|2|G|1373
8URM|1|2|A|1374
8URM|1|2|A|1375
8URM|1|2|U|1376
8URM|1|2|A|1377
8URM|1|2|C|1378
8URM|1|2|G|1379

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

Small ribosomal subunit protein uS7

Chain n

Small ribosomal subunit protein uS9