J3_8URX_010

3D structure

PDB id

8URX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 30 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8URX|1|a|U|686, 8URX|1|a|A|792

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8URX_010 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0585

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8URX|1|a|U|683
8URX|1|a|G|684
8URX|1|a|A|685
8URX|1|a|U|686
8URX|1|a|C|687
8URX|1|a|U|688
8URX|1|a|A|689
*
8URX|1|a|U|773
8URX|1|a|G|774
8URX|1|a|G|775
*
8URX|1|a|C|791
8URX|1|a|A|792
8URX|1|a|A|793
8URX|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2

Chain m

50S ribosomal protein L34