8URX Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8URX_001 | No text annotation | ||
| HL_8URX_002 | tRNA anticodon loop | ||
| HL_8URX_003 | No text annotation | ||
| HL_8URX_004 | No text annotation | ||
| HL_8URX_005 | tRNA anticodon loop | ||
| HL_8URX_006 | No text annotation | ||
| HL_8URX_007 | No text annotation | ||
| HL_8URX_008 | No text annotation | ||
| HL_8URX_009 | GNRA | ||
| HL_8URX_010 | GNRA | ||
| HL_8URX_110 | No text annotation | ||
| HL_8URX_011 | UNCG | ||
| HL_8URX_012 | GNRA related | ||
| HL_8URX_013 | GNRA | ||
| HL_8URX_014 | No text annotation | ||
| HL_8URX_015 | UNCG | ||
| HL_8URX_016 | GNRA | ||
| HL_8URX_017 | UNCG | ||
| HL_8URX_018 | GNRA wlth extra near cWW | ||
| HL_8URX_019 | No text annotation | ||
| HL_8URX_020 | GNRA-like with tWH | ||
| HL_8URX_021 | No text annotation | ||
| HL_8URX_022 | GNRA | ||
| HL_8URX_023 | No text annotation | ||
| HL_8URX_024 | No text annotation | ||
| HL_8URX_025 | GNRA | ||
| HL_8URX_026 | GNRA | ||
| HL_8URX_027 | No text annotation | ||
| HL_8URX_028 | GNRA | ||
| HL_8URX_029 | No text annotation | ||
| HL_8URX_030 | GNRA | ||
| HL_8URX_031 | T-loop related | ||
| HL_8URX_111 | No text annotation | ||
| HL_8URX_032 | No text annotation | ||
| HL_8URX_033 | GNRA | ||
| HL_8URX_034 | GNRA | ||
| HL_8URX_035 | T-loop with 3 stacked bulged bases | ||
| HL_8URX_036 | No text annotation | ||
| HL_8URX_037 | UNCG | ||
| HL_8URX_038 | GNRA | ||
| HL_8URX_039 | No text annotation | ||
| HL_8URX_040 | No text annotation | ||
| HL_8URX_041 | No text annotation | ||
| HL_8URX_042 | UNCG | ||
| HL_8URX_043 | No text annotation | ||
| HL_8URX_044 | No text annotation | ||
| HL_8URX_045 | No text annotation | ||
| HL_8URX_046 | No text annotation | ||
| HL_8URX_047 | T-loop with 2 stacked bulged bases | ||
| HL_8URX_048 | No text annotation | ||
| HL_8URX_049 | T-loop with unstacked turn | ||
| HL_8URX_050 | No text annotation | ||
| HL_8URX_051 | Pseudoknot geometry | ||
| HL_8URX_052 | GNRA | ||
| HL_8URX_053 | GNRA | ||
| HL_8URX_054 | No text annotation | ||
| HL_8URX_055 | T-loop with 2 stacked bulged bases | ||
| HL_8URX_056 | No text annotation | ||
| HL_8URX_057 | GNRA | ||
| HL_8URX_058 | No text annotation | ||
| HL_8URX_059 | GNRA wlth tandem sheared | ||
| HL_8URX_060 | No text annotation | ||
| HL_8URX_061 | No text annotation | ||
| HL_8URX_062 | No text annotation | ||
| HL_8URX_112 | No text annotation | ||
| HL_8URX_063 | No text annotation | ||
| HL_8URX_064 | No text annotation | ||
| HL_8URX_065 | No text annotation | ||
| HL_8URX_066 | No text annotation | ||
| HL_8URX_067 | GNRA wlth tandem sheared | ||
| HL_8URX_068 | No text annotation | ||
| HL_8URX_069 | GNRA | ||
| HL_8URX_070 | T-loop with 2 stacked bulged bases | ||
| HL_8URX_071 | Pseudoknot geometry with 3' bulge | ||
| HL_8URX_072 | GNRA | ||
| HL_8URX_073 | No text annotation | ||
| HL_8URX_074 | Mini UNCG with extended bulge | ||
| HL_8URX_075 | Pseudoknot geometry with 3' bulge | ||
| HL_8URX_076 | UNCG | ||
| HL_8URX_077 | Mini UNCG | ||
| HL_8URX_078 | No text annotation | ||
| HL_8URX_079 | GNRA | ||
| HL_8URX_080 | UNCG | ||
| HL_8URX_113 | No text annotation | ||
| HL_8URX_081 | No text annotation | ||
| HL_8URX_082 | No text annotation | ||
| HL_8URX_083 | No text annotation | ||
| HL_8URX_084 | GNRA related | ||
| HL_8URX_085 | GNRA variation | ||
| HL_8URX_086 | No text annotation | ||
| HL_8URX_087 | No text annotation | ||
| HL_8URX_088 | No text annotation | ||
| HL_8URX_089 | No text annotation | ||
| HL_8URX_090 | No text annotation | ||
| HL_8URX_091 | No text annotation | ||
| HL_8URX_092 | No text annotation | ||
| HL_8URX_093 | No text annotation | ||
| HL_8URX_116 | No text annotation | ||
| HL_8URX_094 | Pseudoknot geometry | ||
| HL_8URX_095 | GNRA | ||
| HL_8URX_096 | GNRA | ||
| HL_8URX_097 | No text annotation | ||
| HL_8URX_098 | No text annotation | ||
| HL_8URX_099 | GNRA variation | ||
| HL_8URX_100 | No text annotation | ||
| HL_8URX_101 | GNRA | ||
| HL_8URX_102 | GNRA | ||
| HL_8URX_103 | Ribsomal LSU H95 | ||
| HL_8URX_104 | No text annotation | ||
| HL_8URX_105 | No text annotation | ||
| HL_8URX_114 | UNCG variation | ||
| HL_8URX_106 | No text annotation | ||
| HL_8URX_107 | GNRA | ||
| HL_8URX_115 | No text annotation | ||
| HL_8URX_108 | No text annotation | ||
| HL_8URX_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8URX_193 | No text annotation | ||
| IL_8URX_194 | No text annotation | ||
| IL_8URX_195 | No text annotation | ||
| IL_8URX_196 | No text annotation | ||
| IL_8URX_197 | No text annotation | ||
| IL_8URX_198 | No text annotation | ||
| IL_8URX_001 | Single bulged G | ||
| IL_8URX_002 | Single bulged A | ||
| IL_8URX_003 | No text annotation | ||
| IL_8URX_004 | Minor groove platform | ||
| IL_8URX_005 | Multiple bulged bases | ||
| IL_8URX_006 | Minor groove platform with extra cWW | ||
| IL_8URX_007 | Minor groove platform | ||
| IL_8URX_199 | Single bulged G | ||
| IL_8URX_008 | Single bulged G, near cWW | ||
| IL_8URX_009 | Isolated non-canonical cWW pair | ||
| IL_8URX_010 | Minor groove platform related | ||
| IL_8URX_011 | Isolated cWH basepair | ||
| IL_8URX_200 | No text annotation | ||
| IL_8URX_012 | tWH-tWH-tHW-tHW | ||
| IL_8URX_013 | No text annotation | ||
| IL_8URX_014 | Kink-turn with non-sequential stacking | ||
| IL_8URX_015 | No text annotation | ||
| IL_8URX_016 | C-loop | ||
| IL_8URX_017 | Single bulged U | ||
| IL_8URX_018 | C-loop | ||
| IL_8URX_019 | Single bulged G | ||
| IL_8URX_020 | No text annotation | ||
| IL_8URX_021 | No text annotation | ||
| IL_8URX_022 | tSH-tHW-tWW | ||
| IL_8URX_023 | No text annotation | ||
| IL_8URX_024 | SSU/LSU pseudoknot | ||
| IL_8URX_025 | Kink-turn related | ||
| IL_8URX_026 | No text annotation | ||
| IL_8URX_027 | tSH-tHW-tHS | ||
| IL_8URX_028 | Major groove platform | ||
| IL_8URX_029 | Major groove minor groove platform; mini C-loop | ||
| IL_8URX_030 | No text annotation | ||
| IL_8URX_031 | Major groove platform; stack outside cWW | ||
| IL_8URX_032 | Single stack bend | ||
| IL_8URX_033 | Tandem non-canonical cWW pairs | ||
| IL_8URX_201 | Triple non-canonical cWW pairs | ||
| IL_8URX_034 | No text annotation | ||
| IL_8URX_035 | Kink-turn | ||
| IL_8URX_036 | Left turn | ||
| IL_8URX_037 | tSH-tHW-tHS | ||
| IL_8URX_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8URX_039 | Single bulged A | ||
| IL_8URX_040 | Single bulged G | ||
| IL_8URX_041 | Minor groove platform | ||
| IL_8URX_042 | No text annotation | ||
| IL_8URX_043 | Minor groove platform | ||
| IL_8URX_208 | Single stack bend | ||
| IL_8URX_044 | No text annotation | ||
| IL_8URX_202 | No text annotation | ||
| IL_8URX_045 | Tandem non-canonical cWW pairs | ||
| IL_8URX_046 | Single bulged U | ||
| IL_8URX_047 | Stack and bulge | ||
| IL_8URX_048 | Isolated cWS basepair | ||
| IL_8URX_049 | Minor groove platform | ||
| IL_8URX_050 | Single bulged A | ||
| IL_8URX_051 | Isolated non-canonical cWW pair | ||
| IL_8URX_052 | No text annotation | ||
| IL_8URX_053 | Minor groove platform | ||
| IL_8URX_054 | No text annotation | ||
| IL_8URX_055 | No text annotation | ||
| IL_8URX_056 | 180 degree turn | ||
| IL_8URX_057 | Double sheared with non-canonical cWW | ||
| IL_8URX_058 | No text annotation | ||
| IL_8URX_059 | No text annotation | ||
| IL_8URX_060 | No text annotation | ||
| IL_8URX_061 | Partly complementary | ||
| IL_8URX_062 | Isolated non-canonical cWW pair | ||
| IL_8URX_063 | Double sheared | ||
| IL_8URX_064 | Triple sheared related | ||
| IL_8URX_065 | Single bulged A | ||
| IL_8URX_066 | No text annotation | ||
| IL_8URX_067 | Triple sheared with non-canonical cWW | ||
| IL_8URX_068 | Single bulged A | ||
| IL_8URX_069 | Minor groove platform | ||
| IL_8URX_070 | No text annotation | ||
| IL_8URX_071 | Single stack bend | ||
| IL_8URX_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8URX_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8URX_074 | No text annotation | ||
| IL_8URX_075 | No text annotation | ||
| IL_8URX_076 | No text annotation | ||
| IL_8URX_077 | No text annotation | ||
| IL_8URX_078 | Double sheared | ||
| IL_8URX_079 | Isolated non-canonical cWW pair | ||
| IL_8URX_080 | AAA cross-strand stack | ||
| IL_8URX_081 | No text annotation | ||
| IL_8URX_082 | tHW-tHW cross-strand stack | ||
| IL_8URX_083 | Single bulged A | ||
| IL_8URX_084 | Single bulged G | ||
| IL_8URX_085 | Triple sheared | ||
| IL_8URX_086 | Major groove platform | ||
| IL_8URX_087 | Multiple bulged bases | ||
| IL_8URX_088 | Single stack bend | ||
| IL_8URX_089 | 90 degree turn | ||
| IL_8URX_203 | No text annotation | ||
| IL_8URX_090 | Stack outside cWW | ||
| IL_8URX_091 | Single stack bend | ||
| IL_8URX_092 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8URX_093 | Single bulged G | ||
| IL_8URX_094 | C-loop with bulged stacked A's | ||
| IL_8URX_095 | Isolated non-canonical cWW pair | ||
| IL_8URX_096 | Double sheared with non-canonical cWW | ||
| IL_8URX_204 | No text annotation | ||
| IL_8URX_209 | Single bulged A | ||
| IL_8URX_097 | Tandem non-canonical cWW pairs | ||
| IL_8URX_098 | Single stack bend | ||
| IL_8URX_099 | Single bulged C | ||
| IL_8URX_100 | UAA/GAN | ||
| IL_8URX_101 | SSU/LSU pseudoknot | ||
| IL_8URX_102 | Single bulged U | ||
| IL_8URX_103 | Kink-turn related | ||
| IL_8URX_104 | No text annotation | ||
| IL_8URX_105 | Isolated non-canonical cWW pair | ||
| IL_8URX_106 | Tandem non-canonical cWW pairs | ||
| IL_8URX_210 | No text annotation | ||
| IL_8URX_107 | No text annotation | ||
| IL_8URX_108 | No text annotation | ||
| IL_8URX_109 | No text annotation | ||
| IL_8URX_110 | Tandem non-canonical cWW pairs | ||
| IL_8URX_111 | Isolated cWS basepair | ||
| IL_8URX_112 | No text annotation | ||
| IL_8URX_113 | Kink-turn | ||
| IL_8URX_114 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8URX_115 | Major groove platform; stack outside cWW | ||
| IL_8URX_116 | C-loop | ||
| IL_8URX_117 | UAA/GAN | ||
| IL_8URX_118 | tSH-tHW-tHS | ||
| IL_8URX_119 | No text annotation | ||
| IL_8URX_120 | Single stack bend | ||
| IL_8URX_121 | Single stack bend | ||
| IL_8URX_205 | No text annotation | ||
| IL_8URX_122 | No text annotation | ||
| IL_8URX_123 | UAA/GAN | ||
| IL_8URX_124 | Tandem non-canonical cWW pairs | ||
| IL_8URX_125 | tSH-tHW | ||
| IL_8URX_126 | Single bulged U | ||
| IL_8URX_127 | No text annotation | ||
| IL_8URX_128 | tSH-tHW-tHS | ||
| IL_8URX_129 | 180 degree turn | ||
| IL_8URX_130 | Single bulged A | ||
| IL_8URX_131 | UAA/GAN variation | ||
| IL_8URX_132 | No text annotation | ||
| IL_8URX_133 | Isolated tWW turn | ||
| IL_8URX_134 | Major groove platform; stack outside cWW | ||
| IL_8URX_206 | No text annotation | ||
| IL_8URX_135 | Intercalated tWH | ||
| IL_8URX_136 | tSH-tSH-tHH-tHS | ||
| IL_8URX_137 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8URX_138 | Triple sheared | ||
| IL_8URX_139 | Single bulged C | ||
| IL_8URX_140 | Single bulged A | ||
| IL_8URX_141 | Kink-turn related | ||
| IL_8URX_142 | Minor groove platform, major groove intercalation | ||
| IL_8URX_143 | Major groove intercalation | ||
| IL_8URX_144 | Major groove minor groove platform; mini C-loop | ||
| IL_8URX_207 | No text annotation | ||
| IL_8URX_145 | UAA/GAN related | ||
| IL_8URX_146 | Intercalated cWW | ||
| IL_8URX_147 | Bulged stacked bases | ||
| IL_8URX_148 | No text annotation | ||
| IL_8URX_149 | Major groove platform | ||
| IL_8URX_150 | No text annotation | ||
| IL_8URX_151 | No text annotation | ||
| IL_8URX_152 | No text annotation | ||
| IL_8URX_153 | Minor groove platform | ||
| IL_8URX_154 | Isolated tHS basepair with bulges | ||
| IL_8URX_155 | Isolated non-canonical cWW pair | ||
| IL_8URX_156 | Tandem non-canonical cWW pairs | ||
| IL_8URX_157 | Isolated cWH basepair | ||
| IL_8URX_158 | Isolated non-canonical cWW pair | ||
| IL_8URX_159 | Tandem non-canonical cWW pairs | ||
| IL_8URX_160 | Isolated non-canonical cWW pair | ||
| IL_8URX_161 | Isolated non-canonical cWW pair | ||
| IL_8URX_162 | No text annotation | ||
| IL_8URX_163 | Isolated non-canonical cWW pair | ||
| IL_8URX_164 | Kink-turn | ||
| IL_8URX_165 | Single bulged U | ||
| IL_8URX_166 | Double sheared | ||
| IL_8URX_167 | No text annotation | ||
| IL_8URX_168 | No text annotation | ||
| IL_8URX_169 | No text annotation | ||
| IL_8URX_170 | Major groove minor groove platform with extra cWW | ||
| IL_8URX_171 | Double sheared with non-canonical cWW | ||
| IL_8URX_172 | No text annotation | ||
| IL_8URX_173 | Isolated non-canonical cWW with bulges | ||
| IL_8URX_174 | No text annotation | ||
| IL_8URX_175 | Major groove platform with intercalation | ||
| IL_8URX_176 | No text annotation | ||
| IL_8URX_177 | Single bulged A | ||
| IL_8URX_178 | tSH-tHS-tHW | ||
| IL_8URX_179 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8URX_180 | C-loop | ||
| IL_8URX_181 | UAA/GAN related, with intercalation | ||
| IL_8URX_182 | Multiple bulged bases | ||
| IL_8URX_183 | UAA/GAN with extra cWW | ||
| IL_8URX_184 | No text annotation | ||
| IL_8URX_185 | Major groove intercalation | ||
| IL_8URX_186 | Multiple bulged bases with non-canonical cWW | ||
| IL_8URX_187 | tHS double platform | ||
| IL_8URX_188 | Major groove intercalation | ||
| IL_8URX_189 | No text annotation | ||
| IL_8URX_190 | Major groove minor groove platform; mini C-loop | ||
| IL_8URX_191 | Symmetric double minor groove platform | ||
| IL_8URX_192 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8URX_020 | No text annotation | ||
| J3_8URX_021 | No text annotation | ||
| J3_8URX_022 | No text annotation | ||
| J3_8URX_023 | No text annotation | ||
| J3_8URX_024 | No text annotation | ||
| J3_8URX_001 | No text annotation | ||
| J3_8URX_002 | No text annotation | ||
| J3_8URX_003 | No text annotation | ||
| J3_8URX_025 | No text annotation | ||
| J3_8URX_004 | No text annotation | ||
| J3_8URX_005 | No text annotation | ||
| J3_8URX_026 | No text annotation | ||
| J3_8URX_006 | No text annotation | ||
| J3_8URX_007 | No text annotation | ||
| J3_8URX_027 | No text annotation | ||
| J3_8URX_008 | No text annotation | ||
| J3_8URX_028 | No text annotation | ||
| J3_8URX_009 | No text annotation | ||
| J3_8URX_029 | No text annotation | ||
| J3_8URX_030 | No text annotation | ||
| J3_8URX_031 | No text annotation | ||
| J3_8URX_032 | No text annotation | ||
| J3_8URX_033 | No text annotation | ||
| J3_8URX_010 | No text annotation | ||
| J3_8URX_011 | No text annotation | ||
| J3_8URX_012 | No text annotation | ||
| J3_8URX_013 | No text annotation | ||
| J3_8URX_014 | No text annotation | ||
| J3_8URX_034 | No text annotation | ||
| J3_8URX_035 | No text annotation | ||
| J3_8URX_015 | Kink-turn 3-way junction | ||
| J3_8URX_036 | No text annotation | ||
| J3_8URX_016 | No text annotation | ||
| J3_8URX_017 | No text annotation | ||
| J3_8URX_037 | No text annotation | ||
| J3_8URX_018 | No text annotation | ||
| J3_8URX_019 | No text annotation | ||
| J4_8URX_001 | tRNA junction | ||
| J4_8URX_002 | tRNA junction | ||
| J4_8URX_003 | No text annotation | ||
| J4_8URX_004 | No text annotation | ||
| J4_8URX_005 | No text annotation | ||
| J4_8URX_006 | No text annotation | ||
| J4_8URX_007 | No text annotation | ||
| J4_8URX_008 | No text annotation | ||
| J4_8URX_009 | No text annotation | ||
| J4_8URX_010 | No text annotation | ||
| J4_8URX_011 | No text annotation | ||
| J4_8URX_012 | No text annotation | ||
| J4_8URX_013 | No text annotation | ||
| J4_8URX_014 | No text annotation | ||
| J4_8URX_015 | No text annotation | ||
| J5_8URX_001 | No text annotation | ||
| J5_8URX_002 | No text annotation | ||
| J5_8URX_003 | No text annotation | ||
| J5_8URX_004 | No text annotation | ||
| J5_8URX_005 | No text annotation | ||
| J5_8URX_006 | No text annotation | ||
| J5_8URX_007 | No text annotation | ||
| J6_8URX_001 | No text annotation | ||
| J7_8URX_001 | No text annotation | ||
| J7_8URX_002 | No text annotation |
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