J3_8URX_033

3D structure

PDB id

8URX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 30 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8URX|1|a|U|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8URX_033 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0502

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8URX|1|a|G|297
8URX|1|a|G|298
8URX|1|a|A|299
8URX|1|a|A|300
8URX|1|a|G|301
*
8URX|1|a|C|316
8URX|1|a|G|317
8URX|1|a|C|318
8URX|1|a|G|319
8URX|1|a|A|320
8URX|1|a|U|321
8URX|1|a|A|322
8URX|1|a|C|323
8URX|1|a|A|324
8URX|1|a|G|325
*
8URX|1|a|C|337
8URX|1|a|G|338
8URX|1|a|U|339
8URX|1|a|A|340
8URX|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4