J3_8UT0_003

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8UT0|1|2|A|217, 8UT0|1|2|A|218, 8UT0|1|2|C|224, 8UT0|1|2|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UT0|1|2|A|213
8UT0|1|2|G|214
8UT0|1|2|A|215
8UT0|1|2|U|216
8UT0|1|2|A|217
8UT0|1|2|A|218
8UT0|1|2|A|219
8UT0|1|2|A|220
8UT0|1|2|A|221
8UT0|1|2|A|222
8UT0|1|2|U|223
8UT0|1|2|C|224
8UT0|1|2|A|225
8UT0|1|2|A|226
8UT0|1|2|U|227
8UT0|1|2|G|228
*
8UT0|1|2|C|237
8UT0|1|2|U|238
8UT0|1|2|C|239
8UT0|1|2|U|240
8UT0|1|2|U|241
8UT0|1|2|U|242
8UT0|1|2|G|243
*
8UT0|1|2|C|250
8UT0|1|2|A|251
8UT0|1|2|U|252

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain ST

40S ribosomal protein S6-A

Chain SV

40S ribosomal protein S8-A

Chain SX

40S ribosomal protein S11-A