J3_8UT0_011
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 8UT0|1|2|G|1199, 8UT0|1|2|G|1201, 8UT0|1|2|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UT0_011 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0752
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8UT0|1|2|C|1180
8UT0|1|2|U|1181
8UT0|1|2|U|1182
8UT0|1|2|A|1183
8UT0|1|2|A|1184
8UT0|1|2|U|1185
8UT0|1|2|U|1186
8UT0|1|2|U|1187
*
8UT0|1|2|G|1198
8UT0|1|2|G|1199
8UT0|1|2|G|1200
8UT0|1|2|G|1201
8UT0|1|2|A|1202
8UT0|1|2|A|1203
8UT0|1|2|A|1204
8UT0|1|2|C|1205
8UT0|1|2|U|1206
8UT0|1|2|C|1207
8UT0|1|2|A|1208
8UT0|1|2|C|1209
*
8UT0|1|2|G|1454
8UT0|1|2|G|1455
8UT0|1|2|C|1456
8UT0|1|2|C|1457
8UT0|1|2|G|1458
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain AA
- 40S ribosomal protein S25-A
- Chain SE
- 40S ribosomal protein S15
- Chain SH
- 40S ribosomal protein S18-A
- Chain SJ
- 40S ribosomal protein S20
- Chain SM
- 40S ribosomal protein S29-A
- Chain SN
- 40S ribosomal protein S31
- Chain m
- Transfer RNA; tRNA
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