3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
AGCU*ACGUUCUAGCAUUCAAG*UGAU
Length
25 nucleotides
Bulged bases
8UT0|1|A|G|2549, 8UT0|1|A|U|2550, 8UT0|1|A|U|2551, 8UT0|1|A|C|2552, 8UT0|1|A|U|2553, 8UT0|1|A|A|2554, 8UT0|1|A|U|2558, 8UT0|1|A|U|2559, 8UT0|1|A|C|2560
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UT0_036 not in the Motif Atlas
Homologous match to J3_8C3A_009
Geometric discrepancy: 0.138
The information below is about J3_8C3A_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_02167.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
Number of instances in this motif group
1

Unit IDs

8UT0|1|A|A|2529
8UT0|1|A|G|2530
8UT0|1|A|C|2531
8UT0|1|A|U|2532
*
8UT0|1|A|A|2547
8UT0|1|A|C|2548
8UT0|1|A|G|2549
8UT0|1|A|U|2550
8UT0|1|A|U|2551
8UT0|1|A|C|2552
8UT0|1|A|U|2553
8UT0|1|A|A|2554
8UT0|1|A|G|2555
8UT0|1|A|C|2556
8UT0|1|A|A|2557
8UT0|1|A|U|2558
8UT0|1|A|U|2559
8UT0|1|A|C|2560
8UT0|1|A|A|2561
8UT0|1|A|A|2562
8UT0|1|A|G|2563
*
8UT0|1|A|U|2578
8UT0|1|A|G|2579
8UT0|1|A|A|2580
8UT0|1|A|U|2581

Current chains

Chain A
25S rRNA

Nearby chains

Chain LD
60S ribosomal protein L2-A
Chain LJ
60S ribosomal protein L8-A
Chain LZ
60S ribosomal protein L25
Chain Lb
60S ribosomal protein L27-A
Chain Le
60S ribosomal protein L30
Chain Li
60S ribosomal protein L34-A
Chain Lr
60S ribosomal protein L43-A

Coloring options:


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