J3_8UT0_036
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 8UT0|1|A|G|2549, 8UT0|1|A|U|2550, 8UT0|1|A|U|2551, 8UT0|1|A|C|2552, 8UT0|1|A|U|2553, 8UT0|1|A|A|2554, 8UT0|1|A|U|2558, 8UT0|1|A|U|2559, 8UT0|1|A|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UT0_036 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.138
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8UT0|1|A|A|2529
8UT0|1|A|G|2530
8UT0|1|A|C|2531
8UT0|1|A|U|2532
*
8UT0|1|A|A|2547
8UT0|1|A|C|2548
8UT0|1|A|G|2549
8UT0|1|A|U|2550
8UT0|1|A|U|2551
8UT0|1|A|C|2552
8UT0|1|A|U|2553
8UT0|1|A|A|2554
8UT0|1|A|G|2555
8UT0|1|A|C|2556
8UT0|1|A|A|2557
8UT0|1|A|U|2558
8UT0|1|A|U|2559
8UT0|1|A|C|2560
8UT0|1|A|A|2561
8UT0|1|A|A|2562
8UT0|1|A|G|2563
*
8UT0|1|A|U|2578
8UT0|1|A|G|2579
8UT0|1|A|A|2580
8UT0|1|A|U|2581
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LZ
- 60S ribosomal protein L25
- Chain Lb
- 60S ribosomal protein L27-A
- Chain Le
- 60S ribosomal protein L30
- Chain Li
- 60S ribosomal protein L34-A
- Chain Lr
- 60S ribosomal protein L43-A
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