J3_8UT0_042
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8UT0|1|B|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UT0_042 not in the Motif Atlas
- Homologous match to J3_8C3A_059
- Geometric discrepancy: 0.088
- The information below is about J3_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8UT0|1|B|C|9
8UT0|1|B|C|10
8UT0|1|B|A|11
8UT0|1|B|U|12
8UT0|1|B|A|13
8UT0|1|B|U|14
*
8UT0|1|B|A|66
8UT0|1|B|G|67
*
8UT0|1|B|U|111
8UT0|1|B|G|112
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain LG
- 60S ribosomal protein L5
- Chain LL
- 60S ribosomal protein L10
- Chain LV
- 60S ribosomal protein L21-A
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