J3_8UTJ_022

3D structure

PDB id

8UTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8UTJ|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UTJ_022 not in the Motif Atlas

Geometric match to J3_4WF9_005

Geometric discrepancy: 0.3119

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

8UTJ|1|2|C|826
8UTJ|1|2|U|827
8UTJ|1|2|U|828
8UTJ|1|2|G|829
*
8UTJ|1|2|C|857
8UTJ|1|2|G|858
8UTJ|1|2|G|859
8UTJ|1|2|A|860
8UTJ|1|2|G|861
*
8UTJ|1|2|C|868
8UTJ|1|2|G|869
8UTJ|1|2|U|870
8UTJ|1|2|U|871
8UTJ|1|2|A|872
8UTJ|1|2|A|873
8UTJ|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

Small ribosomal subunit protein uS8

Chain z

30S ribosomal protein S21