J3_8UTJ_025
3D structure
- PDB id
- 8UTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8UTJ|1|2|A|975, 8UTJ|1|2|G|976, 8UTJ|1|2|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UTJ_025 not in the Motif Atlas
- Geometric match to J3_5J7L_006
- Geometric discrepancy: 0.1158
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8UTJ|1|2|U|955
8UTJ|1|2|U|956
8UTJ|1|2|U|957
8UTJ|1|2|A|958
8UTJ|1|2|A|959
8UTJ|1|2|U|960
8UTJ|1|2|U|961
8UTJ|1|2|C|962
*
8UTJ|1|2|G|973
8UTJ|1|2|A|974
8UTJ|1|2|A|975
8UTJ|1|2|G|976
8UTJ|1|2|A|977
8UTJ|1|2|A|978
8UTJ|1|2|C|979
8UTJ|1|2|C|980
8UTJ|1|2|U|981
8UTJ|1|2|U|982
8UTJ|1|2|A|983
8UTJ|1|2|C|984
*
8UTJ|1|2|G|1221
8UTJ|1|2|G|1222
8UTJ|1|2|C|1223
8UTJ|1|2|U|1224
8UTJ|1|2|A|1225
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain o
- Small ribosomal subunit protein uS10
- Chain r
- 30S ribosomal protein S13
- Chain s
- Small ribosomal subunit protein uS14
- Chain x
- Small ribosomal subunit protein uS19
Coloring options: