3D structure

PDB id
8UTJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UTJ_028 not in the Motif Atlas
Geometric match to J3_5J7L_008
Geometric discrepancy: 0.1145
The information below is about J3_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8UTJ|1|2|C|1063
8UTJ|1|2|G|1064
8UTJ|1|2|U|1065
8UTJ|1|2|C|1066
8UTJ|1|2|A|1067
8UTJ|1|2|G|1068
*
8UTJ|1|2|C|1107
8UTJ|1|2|G|1108
8UTJ|1|2|C|1109
8UTJ|1|2|A|1110
8UTJ|1|2|A|1111
8UTJ|1|2|C|1112
8UTJ|1|2|C|1113
*
8UTJ|1|2|G|1187
8UTJ|1|2|A|1188
8UTJ|1|2|U|1189
8UTJ|1|2|G|1190
8UTJ|1|2|A|1191
8UTJ|1|2|C|1192
8UTJ|1|2|G|1193

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain h
30S ribosomal protein S3
Chain j
30S ribosomal protein S5
Chain n
Small ribosomal subunit protein uS9
Chain o
Small ribosomal subunit protein uS10
Chain s
Small ribosomal subunit protein uS14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2814 s