J3_8UU4_016
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU4_016 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.11
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8UU4|1|a|C|1072
8UU4|1|a|G|1073
8UU4|1|a|U|1074
8UU4|1|a|C|1075
8UU4|1|a|A|1076
8UU4|1|a|G|1077
*
8UU4|1|a|C|1116
8UU4|1|a|G|1117
8UU4|1|a|C|1118
8UU4|1|a|A|1119
8UU4|1|a|A|1120
8UU4|1|a|C|1121
8UU4|1|a|C|1122
*
8UU4|1|a|G|1194
8UU4|1|a|A|1195
8UU4|1|a|U|1196
8UU4|1|a|G|1197
8UU4|1|a|A|1198
8UU4|1|a|C|1199
8UU4|1|a|G|1200
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain e
- Small ribosomal subunit protein uS5
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain n
- Small ribosomal subunit protein uS14
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