J3_8UU4_023

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAG*CGCCAAAGAC*GGUAG

Length

20 nucleotides

Bulged bases

8UU4|1|A|A|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU4_023 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.11

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8UU4|1|A|U|339
8UU4|1|A|G|340
8UU4|1|A|A|341
8UU4|1|A|A|342
8UU4|1|A|G|343
*
8UU4|1|A|C|359
8UU4|1|A|G|360
8UU4|1|A|C|361
8UU4|1|A|C|362
8UU4|1|A|A|363
8UU4|1|A|A|364
8UU4|1|A|A|365
8UU4|1|A|G|366
8UU4|1|A|A|367
8UU4|1|A|C|368
*
8UU4|1|A|G|380
8UU4|1|A|G|381
8UU4|1|A|U|382
8UU4|1|A|A|383
8UU4|1|A|G|384

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain W

Large ribosomal subunit protein uL24