J3_8UU4_025

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

8UU4|1|A|C|1389, 8UU4|1|A|A|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU4_025 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.0924

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

8UU4|1|A|U|1388
8UU4|1|A|C|1389
8UU4|1|A|G|1390
8UU4|1|A|G|1391
8UU4|1|A|G|1392
8UU4|1|A|A|1393
8UU4|1|A|C|1394
*
8UU4|1|A|G|1425
8UU4|1|A|A|1426
8UU4|1|A|C|1427
8UU4|1|A|A|1428
8UU4|1|A|A|1429
*
8UU4|1|A|U|1446
8UU4|1|A|A|1447

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein uL23