J3_8UU4_030

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU4_030 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.1658

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8UU4|1|a|G|46
8UU4|1|a|C|47
*
8UU4|1|a|G|369
8UU4|1|a|G|370
8UU4|1|a|A|371
8UU4|1|a|A|372
8UU4|1|a|U|373
8UU4|1|a|C|374
8UU4|1|a|U|375
*
8UU4|1|a|A|401
8UU4|1|a|G|402
8UU4|1|a|C|403

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain l

Small ribosomal subunit protein uS12

Chain p

Small ribosomal subunit protein bS16