J3_8UU4_031
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCCUAAU*AGGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 8UU4|1|a|C|48, 8UU4|1|a|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU4_031 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.098
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8UU4|1|a|G|46
8UU4|1|a|C|47
8UU4|1|a|C|48
8UU4|1|a|U|49
8UU4|1|a|A|50
8UU4|1|a|A|51
8UU4|1|a|U|52
*
8UU4|1|a|A|367
8UU4|1|a|G|368
8UU4|1|a|G|369
8UU4|1|a|G|370
8UU4|1|a|A|371
8UU4|1|a|A|372
8UU4|1|a|U|373
8UU4|1|a|C|374
8UU4|1|a|U|375
*
8UU4|1|a|A|401
8UU4|1|a|G|402
8UU4|1|a|C|403
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain l
- Small ribosomal subunit protein uS12
- Chain p
- Small ribosomal subunit protein bS16
Coloring options: