J3_8UU4_034
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UG*CACCAGUGG*CGA
- Length
- 14 nucleotides
- Bulged bases
- 8UU4|1|a|U|731
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU4_034 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.1535
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8UU4|1|a|U|680
8UU4|1|a|G|681
*
8UU4|1|a|C|725
8UU4|1|a|A|726
8UU4|1|a|C|727
8UU4|1|a|C|728
8UU4|1|a|A|729
8UU4|1|a|G|730
8UU4|1|a|U|731
8UU4|1|a|G|732
8UU4|1|a|G|733
*
8UU4|1|a|C|740
8UU4|1|a|G|741
8UU4|1|a|A|742
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain f
- Small ribosomal subunit protein bS6
- Chain k
- Small ribosomal subunit protein uS11
- Chain o
- Small ribosomal subunit protein uS15
- Chain r
- Small ribosomal subunit protein bS18
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