3D structure

PDB id
8UU5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGAAUA*UGA*UAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UU5_005 not in the Motif Atlas
Homologous match to J3_7A0S_006
Geometric discrepancy: 0.117
The information below is about J3_7A0S_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

8UU5|1|A|C|1342
8UU5|1|A|G|1343
8UU5|1|A|A|1344
8UU5|1|A|A|1345
8UU5|1|A|U|1346
8UU5|1|A|A|1347
*
8UU5|1|A|U|1674
8UU5|1|A|G|1675
8UU5|1|A|A|1676
*
8UU5|1|A|U|1688
8UU5|1|A|A|1689
8UU5|1|A|A|1690
8UU5|1|A|G|1691

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1011 s