J3_8UU5_009

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUC*GAG*CACAAG

Length

12 nucleotides

Bulged bases

8UU5|1|A|C|2367, 8UU5|1|A|A|2369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU5_009 not in the Motif Atlas

Homologous match to J3_4WF9_008

Geometric discrepancy: 0.1778

The information below is about J3_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61124.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8UU5|1|A|C|2328
8UU5|1|A|U|2329
8UU5|1|A|C|2330
*
8UU5|1|A|G|2354
8UU5|1|A|A|2355
8UU5|1|A|G|2356
*
8UU5|1|A|C|2365
8UU5|1|A|A|2366
8UU5|1|A|C|2367
8UU5|1|A|A|2368
8UU5|1|A|A|2369
8UU5|1|A|G|2370

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

Large ribosomal subunit protein uL18

Chain Y

Large ribosomal subunit protein bL27