3D structure

PDB id
8UU5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GC*GGAAUCU*AGC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UU5_030 not in the Motif Atlas
Geometric match to J3_8C3A_082
Geometric discrepancy: 0.3372
The information below is about J3_8C3A_082
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.2
Basepair signature
cWW-F-cWW-F-F-cSW-F-cWW
Number of instances in this motif group
5

Unit IDs

8UU5|1|a|G|46
8UU5|1|a|C|47
*
8UU5|1|a|G|369
8UU5|1|a|G|370
8UU5|1|a|A|371
8UU5|1|a|A|372
8UU5|1|a|U|373
8UU5|1|a|C|374
8UU5|1|a|U|375
*
8UU5|1|a|A|401
8UU5|1|a|G|402
8UU5|1|a|C|403

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain l
Small ribosomal subunit protein uS12
Chain p
Small ribosomal subunit protein bS16

Coloring options:


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