J3_8UU6_006

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

8UU6|1|A|A|1658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU6_006 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1086

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

8UU6|1|A|C|1349
8UU6|1|A|U|1350
8UU6|1|A|A|1351
8UU6|1|A|A|1352
8UU6|1|A|G|1353
*
8UU6|1|A|C|1654
8UU6|1|A|G|1655
8UU6|1|A|C|1656
8UU6|1|A|A|1657
8UU6|1|A|A|1658
8UU6|1|A|A|1659
8UU6|1|A|C|1660
*
8UU6|1|A|G|1669
8UU6|1|A|U|1670
8UU6|1|A|A|1671
8UU6|1|A|G|1672

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34