J3_8UU6_020

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU6_020 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.1387

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8UU6|1|A|G|30
8UU6|1|A|C|31
*
8UU6|1|A|G|520
8UU6|1|A|U|521
8UU6|1|A|G|522
8UU6|1|A|A|523
8UU6|1|A|A|524
8UU6|1|A|A|525
8UU6|1|A|A|526
8UU6|1|A|G|527
*
8UU6|1|A|C|554
8UU6|1|A|C|555

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein bL20

Chain W

Large ribosomal subunit protein uL24