J3_8UU7_009
3D structure
- PDB id
- 8UU7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8UU7|1|A|A|2551, 8UU7|1|A|U|2552
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU7_009 not in the Motif Atlas
- Homologous match to J3_4WF9_009
- Geometric discrepancy: 0.109
- The information below is about J3_4WF9_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8UU7|1|A|C|2550
8UU7|1|A|A|2551
8UU7|1|A|U|2552
8UU7|1|A|C|2553
*
8UU7|1|A|G|2578
8UU7|1|A|U|2579
8UU7|1|A|U|2580
*
8UU7|1|A|A|2594
8UU7|1|A|U|2595
8UU7|1|A|U|2596
8UU7|1|A|A|2597
8UU7|1|A|A|2598
8UU7|1|A|A|2599
8UU7|1|A|G|2600
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain M
- Large ribosomal subunit protein uL14
- Chain v
- GTPase HflX
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