J3_8UU7_023

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAG*CGCCAAAGAC*GGUAG

Length

20 nucleotides

Bulged bases

8UU7|1|A|A|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU7_023 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1164

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8UU7|1|A|U|339
8UU7|1|A|G|340
8UU7|1|A|A|341
8UU7|1|A|A|342
8UU7|1|A|G|343
*
8UU7|1|A|C|359
8UU7|1|A|G|360
8UU7|1|A|C|361
8UU7|1|A|C|362
8UU7|1|A|A|363
8UU7|1|A|A|364
8UU7|1|A|A|365
8UU7|1|A|G|366
8UU7|1|A|A|367
8UU7|1|A|C|368
*
8UU7|1|A|G|380
8UU7|1|A|G|381
8UU7|1|A|U|382
8UU7|1|A|A|383
8UU7|1|A|G|384

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain W

Large ribosomal subunit protein uL24