J3_8UU7_025

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

8UU7|1|A|C|1389, 8UU7|1|A|A|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU7_025 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.0988

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

8UU7|1|A|U|1388
8UU7|1|A|C|1389
8UU7|1|A|G|1390
8UU7|1|A|G|1391
8UU7|1|A|G|1392
8UU7|1|A|A|1393
8UU7|1|A|C|1394
*
8UU7|1|A|G|1425
8UU7|1|A|A|1426
8UU7|1|A|C|1427
8UU7|1|A|A|1428
8UU7|1|A|A|1429
*
8UU7|1|A|U|1446
8UU7|1|A|A|1447

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein uL23