J3_8UU7_030
3D structure
- PDB id
- 8UU7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCCUAAU*AGGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 8UU7|1|a|C|48, 8UU7|1|a|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU7_030 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.115
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8UU7|1|a|G|46
8UU7|1|a|C|47
8UU7|1|a|C|48
8UU7|1|a|U|49
8UU7|1|a|A|50
8UU7|1|a|A|51
8UU7|1|a|U|52
*
8UU7|1|a|A|367
8UU7|1|a|G|368
8UU7|1|a|G|369
8UU7|1|a|G|370
8UU7|1|a|A|371
8UU7|1|a|A|372
8UU7|1|a|U|373
8UU7|1|a|C|374
8UU7|1|a|U|375
*
8UU7|1|a|A|401
8UU7|1|a|G|402
8UU7|1|a|C|403
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain l
- Small ribosomal subunit protein uS12
- Chain p
- Small ribosomal subunit protein bS16
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