J3_8UU8_012

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

8UU8|1|a|U|1221

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU8_012 not in the Motif Atlas

Geometric match to J3_5J7L_007

Geometric discrepancy: 0.1615

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

8UU8|1|a|C|999
8UU8|1|a|U|1000
8UU8|1|a|U|1001
8UU8|1|a|G|1002
*
8UU8|1|a|C|1054
8UU8|1|a|A|1055
8UU8|1|a|G|1056
*
8UU8|1|a|C|1217
8UU8|1|a|U|1218
8UU8|1|a|U|1219
8UU8|1|a|A|1220
8UU8|1|a|U|1221
8UU8|1|a|G|1222

Current chains

Chain a

16S Ribosomal RNA

Nearby chains