J3_8UU8_022
3D structure
- PDB id
- 8UU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCC*GCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8UU8|1|A|U|2423, 8UU8|1|A|A|2459
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU8_022 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1248
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8UU8|1|A|G|2315
8UU8|1|A|C|2316
8UU8|1|A|C|2317
*
8UU8|1|A|G|2417
8UU8|1|A|C|2418
8UU8|1|A|U|2419
8UU8|1|A|U|2420
8UU8|1|A|A|2421
8UU8|1|A|G|2422
8UU8|1|A|U|2423
8UU8|1|A|G|2424
8UU8|1|A|A|2425
8UU8|1|A|U|2426
8UU8|1|A|C|2427
8UU8|1|A|C|2428
*
8UU8|1|A|G|2454
8UU8|1|A|C|2455
8UU8|1|A|U|2456
8UU8|1|A|C|2457
8UU8|1|A|A|2458
8UU8|1|A|A|2459
8UU8|1|A|C|2460
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL33
- Chain 7
- Large ribosomal subunit protein bL35
- Chain N
- Large ribosomal subunit protein uL15
- Chain Y
- Large ribosomal subunit protein bL27
- Chain x
- Transfer RNA; tRNA
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