J3_8UU8_034
3D structure
- PDB id
- 8UU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGA*UGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 8UU8|1|a|U|1190
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU8_034 not in the Motif Atlas
- Geometric match to J3_5J7L_010
- Geometric discrepancy: 0.2046
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8UU8|1|a|U|1125
8UU8|1|a|G|1126
8UU8|1|a|A|1127
*
8UU8|1|a|U|1163
8UU8|1|a|G|1164
8UU8|1|a|A|1165
8UU8|1|a|C|1166
*
8UU8|1|a|G|1188
8UU8|1|a|G|1189
8UU8|1|a|U|1190
8UU8|1|a|G|1191
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain b
- Small ribosomal subunit protein uS2
- Chain i
- Small ribosomal subunit protein uS9
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