J3_8UU9_005

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAUA*UGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU9_005 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1158

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8UU9|1|A|C|1342
8UU9|1|A|G|1343
8UU9|1|A|A|1344
8UU9|1|A|A|1345
8UU9|1|A|U|1346
8UU9|1|A|A|1347
*
8UU9|1|A|U|1674
8UU9|1|A|G|1675
8UU9|1|A|A|1676
*
8UU9|1|A|U|1688
8UU9|1|A|A|1689
8UU9|1|A|A|1690
8UU9|1|A|G|1691

Current chains

Chain A

23S Ribosomal RNA

Nearby chains