J3_8UU9_009

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GAG*CACAAG

Length

12 nucleotides

Bulged bases

8UU9|1|A|C|2367, 8UU9|1|A|A|2369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU9_009 not in the Motif Atlas

Homologous match to J3_4WF9_008

Geometric discrepancy: 0.1904

The information below is about J3_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61124.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8UU9|1|A|C|2328
8UU9|1|A|U|2329
8UU9|1|A|C|2330
*
8UU9|1|A|G|2354
8UU9|1|A|A|2355
8UU9|1|A|G|2356
*
8UU9|1|A|C|2365
8UU9|1|A|A|2366
8UU9|1|A|C|2367
8UU9|1|A|A|2368
8UU9|1|A|A|2369
8UU9|1|A|G|2370

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

Large ribosomal subunit protein uL18

Chain Y

Large ribosomal subunit protein bL27