J3_8UU9_010

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8UU9|1|A|A|2551, 8UU9|1|A|U|2552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU9_010 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1058

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8UU9|1|A|C|2550
8UU9|1|A|A|2551
8UU9|1|A|U|2552
8UU9|1|A|C|2553
*
8UU9|1|A|G|2578
8UU9|1|A|U|2579
8UU9|1|A|U|2580
*
8UU9|1|A|A|2594
8UU9|1|A|U|2595
8UU9|1|A|U|2596
8UU9|1|A|A|2597
8UU9|1|A|A|2598
8UU9|1|A|A|2599
8UU9|1|A|G|2600

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL14

Chain v

GTPase HflX