J3_8UU9_011

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAU*AGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU9_011 not in the Motif Atlas

Homologous match to J3_7A0S_012

Geometric discrepancy: 0.183

The information below is about J3_7A0S_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20574.1

Basepair signature

cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

8UU9|1|A|C|2822
8UU9|1|A|A|2823
8UU9|1|A|U|2824
*
8UU9|1|A|A|2835
8UU9|1|A|G|2836
8UU9|1|A|U|2837
8UU9|1|A|A|2838
8UU9|1|A|A|2839
8UU9|1|A|G|2840
*
8UU9|1|A|C|2918
8UU9|1|A|G|2919
8UU9|1|A|A|2920
8UU9|1|A|G|2921
8UU9|1|A|G|2922

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3