J3_8UU9_020

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU9_020 not in the Motif Atlas

Geometric match to J3_7A0S_001

Geometric discrepancy: 0.1229

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8UU9|1|A|G|30
8UU9|1|A|C|31
*
8UU9|1|A|G|520
8UU9|1|A|U|521
8UU9|1|A|G|522
8UU9|1|A|A|523
8UU9|1|A|A|524
8UU9|1|A|A|525
8UU9|1|A|A|526
8UU9|1|A|G|527
*
8UU9|1|A|C|554
8UU9|1|A|C|555

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein bL20

Chain W

Large ribosomal subunit protein uL24