J3_8UU9_024

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAG*CGCCAAAGAC*GGUAG

Length

20 nucleotides

Bulged bases

8UU9|1|A|A|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU9_024 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1073

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8UU9|1|A|U|339
8UU9|1|A|G|340
8UU9|1|A|A|341
8UU9|1|A|A|342
8UU9|1|A|G|343
*
8UU9|1|A|C|359
8UU9|1|A|G|360
8UU9|1|A|C|361
8UU9|1|A|C|362
8UU9|1|A|A|363
8UU9|1|A|A|364
8UU9|1|A|A|365
8UU9|1|A|G|366
8UU9|1|A|A|367
8UU9|1|A|C|368
*
8UU9|1|A|G|380
8UU9|1|A|G|381
8UU9|1|A|U|382
8UU9|1|A|A|383
8UU9|1|A|G|384

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain W

Large ribosomal subunit protein uL24