J3_8UU9_025

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAG*CGCAAAC*GUA

Length

14 nucleotides

Bulged bases

8UU9|1|A|A|1658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU9_025 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.1472

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8UU9|1|A|U|1350
8UU9|1|A|A|1351
8UU9|1|A|A|1352
8UU9|1|A|G|1353
*
8UU9|1|A|C|1654
8UU9|1|A|G|1655
8UU9|1|A|C|1656
8UU9|1|A|A|1657
8UU9|1|A|A|1658
8UU9|1|A|A|1659
8UU9|1|A|C|1660
*
8UU9|1|A|G|1669
8UU9|1|A|U|1670
8UU9|1|A|A|1671

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34