J3_8UU9_026

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

8UU9|1|A|A|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU9_026 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.0994

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

8UU9|1|A|U|1388
8UU9|1|A|C|1389
8UU9|1|A|G|1390
8UU9|1|A|G|1391
8UU9|1|A|G|1392
8UU9|1|A|A|1393
8UU9|1|A|C|1394
*
8UU9|1|A|G|1425
8UU9|1|A|A|1426
8UU9|1|A|C|1427
8UU9|1|A|A|1428
8UU9|1|A|A|1429
*
8UU9|1|A|U|1446
8UU9|1|A|A|1447

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein uL23