J3_8UU9_032

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCUAAU*AGGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

8UU9|1|a|C|48, 8UU9|1|a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU9_032 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0965

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8UU9|1|a|G|46
8UU9|1|a|C|47
8UU9|1|a|C|48
8UU9|1|a|U|49
8UU9|1|a|A|50
8UU9|1|a|A|51
8UU9|1|a|U|52
*
8UU9|1|a|A|367
8UU9|1|a|G|368
8UU9|1|a|G|369
8UU9|1|a|G|370
8UU9|1|a|A|371
8UU9|1|a|A|372
8UU9|1|a|U|373
8UU9|1|a|C|374
8UU9|1|a|U|375
*
8UU9|1|a|A|401
8UU9|1|a|G|402
8UU9|1|a|C|403

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain l

Small ribosomal subunit protein uS12

Chain p

Small ribosomal subunit protein bS16