3D structure

PDB id
8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UG*CACCAGUGG*CGA
Length
14 nucleotides
Bulged bases
8UU9|1|a|U|731
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UU9_035 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.1491
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8UU9|1|a|U|680
8UU9|1|a|G|681
*
8UU9|1|a|C|725
8UU9|1|a|A|726
8UU9|1|a|C|727
8UU9|1|a|C|728
8UU9|1|a|A|729
8UU9|1|a|G|730
8UU9|1|a|U|731
8UU9|1|a|G|732
8UU9|1|a|G|733
*
8UU9|1|a|C|740
8UU9|1|a|G|741
8UU9|1|a|A|742

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain f
Small ribosomal subunit protein bS6
Chain k
Small ribosomal subunit protein uS11
Chain o
Small ribosomal subunit protein uS15
Chain r
Small ribosomal subunit protein bS18

Coloring options:


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