J3_8UVR_037

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8UVR|1|1A|U|448, 8UVR|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UVR_037 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0441

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.2

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

11

Unit IDs

8UVR|1|1A|C|32
8UVR|1|1A|U|33
8UVR|1|1A|C|34
8UVR|1|1A|G|35
*
8UVR|1|1A|C|445
8UVR|1|1A|G|446
8UVR|1|1A|A|447
8UVR|1|1A|U|448
8UVR|1|1A|A|449
8UVR|1|1A|G|450
8UVR|1|1A|C|451
8UVR|1|1A|G|452
8UVR|1|1A|C|453
8UVR|1|1A|A|454
8UVR|1|1A|C|455
8UVR|1|1A|C|456
8UVR|1|1A|A|457
8UVR|1|1A|G|458
8UVR|1|1A|U|459
8UVR|1|1A|A|460
8UVR|1|1A|C|461
*
8UVR|1|1A|G|468
8UVR|1|1A|G|469
8UVR|1|1A|A|470
8UVR|1|1A|A|471
8UVR|1|1A|A|472
8UVR|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23