J3_8UVR_055

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

8UVR|1|2A|U|504, 8UVR|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UVR_055 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0521

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

8UVR|1|2A|G|30
8UVR|1|2A|C|31
*
8UVR|1|2A|G|474
8UVR|1|2A|U|475
8UVR|1|2A|G|476
8UVR|1|2A|A|477
8UVR|1|2A|A|478
8UVR|1|2A|A|479
8UVR|1|2A|A|480
8UVR|1|2A|G|481
8UVR|1|2A|A|482
8UVR|1|2A|A|483
8UVR|1|2A|C|484
*
8UVR|1|2A|G|496
8UVR|1|2A|A|497
8UVR|1|2A|G|498
8UVR|1|2A|U|499
8UVR|1|2A|G|500
8UVR|1|2A|A|501
8UVR|1|2A|A|502
8UVR|1|2A|A|503
8UVR|1|2A|U|504
8UVR|1|2A|A|505
8UVR|1|2A|G|506
8UVR|1|2A|A|507
8UVR|1|2A|G|508
8UVR|1|2A|C|509
8UVR|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24