J3_8UVS_040

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

8UVS|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UVS_040 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0468

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8UVS|1|1A|C|297
8UVS|1|1A|G|298
8UVS|1|1A|A|299
8UVS|1|1A|A|300
8UVS|1|1A|G|301
*
8UVS|1|1A|C|316
8UVS|1|1A|G|317
8UVS|1|1A|C|318
8UVS|1|1A|C|319
8UVS|1|1A|A|320
8UVS|1|1A|G|321
8UVS|1|1A|A|322
8UVS|1|1A|G|323
8UVS|1|1A|A|324
8UVS|1|1A|G|325
*
8UVS|1|1A|C|337
8UVS|1|1A|G|338
8UVS|1|1A|U|339
8UVS|1|1A|A|340
8UVS|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24