3D structure

PDB id
8UVS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.75 Å

Loop

Sequence
GCGGGAC*GGCAG*CC
Length
14 nucleotides
Bulged bases
8UVS|1|1A|A|1384
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UVS_041 not in the Motif Atlas
Homologous match to J3_9DFE_012
Geometric discrepancy: 0.0621
The information below is about J3_9DFE_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_94309.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW-F
Number of instances in this motif group
9

Unit IDs

8UVS|1|1A|G|1344
8UVS|1|1A|C|1345
8UVS|1|1A|G|1346
8UVS|1|1A|G|1347
8UVS|1|1A|G|1348
8UVS|1|1A|A|1349
8UVS|1|1A|C|1350
*
8UVS|1|1A|G|1381
8UVS|1|1A|G|1382
8UVS|1|1A|C|1383
8UVS|1|1A|A|1384
8UVS|1|1A|G|1385
*
8UVS|1|1A|C|1402
8UVS|1|1A|C|1403

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1X
50S ribosomal protein L23

Coloring options:


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