J3_8UVS_055

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

8UVS|1|2A|U|504, 8UVS|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UVS_055 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0533

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8UVS|1|2A|G|30
8UVS|1|2A|C|31
*
8UVS|1|2A|G|474
8UVS|1|2A|U|475
8UVS|1|2A|G|476
8UVS|1|2A|A|477
8UVS|1|2A|A|478
8UVS|1|2A|A|479
8UVS|1|2A|A|480
8UVS|1|2A|G|481
8UVS|1|2A|A|482
8UVS|1|2A|A|483
8UVS|1|2A|C|484
*
8UVS|1|2A|G|496
8UVS|1|2A|A|497
8UVS|1|2A|G|498
8UVS|1|2A|U|499
8UVS|1|2A|G|500
8UVS|1|2A|A|501
8UVS|1|2A|A|502
8UVS|1|2A|A|503
8UVS|1|2A|U|504
8UVS|1|2A|A|505
8UVS|1|2A|G|506
8UVS|1|2A|A|507
8UVS|1|2A|G|508
8UVS|1|2A|C|509
8UVS|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24