J3_8UX8_021

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8UX8|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UX8_021 not in the Motif Atlas

Geometric match to J3_4WF9_005

Geometric discrepancy: 0.306

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

8UX8|1|2|C|826
8UX8|1|2|U|827
8UX8|1|2|U|828
8UX8|1|2|G|829
*
8UX8|1|2|C|857
8UX8|1|2|G|858
8UX8|1|2|G|859
8UX8|1|2|A|860
8UX8|1|2|G|861
*
8UX8|1|2|C|868
8UX8|1|2|G|869
8UX8|1|2|U|870
8UX8|1|2|U|871
8UX8|1|2|A|872
8UX8|1|2|A|873
8UX8|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

Small ribosomal subunit protein uS8

Chain z

30S ribosomal protein S21