J3_8UX8_022

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UX8_022 not in the Motif Atlas

Geometric match to J3_5J7L_052

Geometric discrepancy: 0.1331

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8UX8|1|2|C|936
8UX8|1|2|A|937
8UX8|1|2|A|938
8UX8|1|2|G|939
*
8UX8|1|2|C|1344
8UX8|1|2|U|1345
8UX8|1|2|A|1346
8UX8|1|2|G|1347
8UX8|1|2|U|1348
8UX8|1|2|A|1349
8UX8|1|2|A|1350
*
8UX8|1|2|U|1372
8UX8|1|2|G|1373
8UX8|1|2|A|1374
8UX8|1|2|A|1375
8UX8|1|2|U|1376
8UX8|1|2|A|1377
8UX8|1|2|C|1378
8UX8|1|2|G|1379

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain n

Small ribosomal subunit protein uS9

Chain o

Small ribosomal subunit protein uS10