J3_8UXA_002
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUCUA*UAG*CUGG
- Length
- 14 nucleotides
- Bulged bases
- 8UXA|1|A|U|595, 8UXA|1|A|U|683, 8UXA|1|A|G|684
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UXA_002 not in the Motif Atlas
- Geometric match to J3_9DFE_007
- Geometric discrepancy: 0.1547
- The information below is about J3_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8UXA|1|A|C|592
8UXA|1|A|G|593
8UXA|1|A|A|594
8UXA|1|A|U|595
8UXA|1|A|C|596
8UXA|1|A|U|597
8UXA|1|A|A|598
*
8UXA|1|A|U|664
8UXA|1|A|A|665
8UXA|1|A|G|666
*
8UXA|1|A|C|682
8UXA|1|A|U|683
8UXA|1|A|G|684
8UXA|1|A|G|685
Current chains
- Chain A
- Large ribosomal subunit rRNA
Nearby chains
- Chain B
- Large ribosomal subunit protein uL2m
- Chain Y
- Large ribosomal subunit protein bL34m
Coloring options: