J3_8UXA_004

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAG*CGAAC*GAUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UXA_004 not in the Motif Atlas

Geometric match to J3_9DFE_008

Geometric discrepancy: 0.1069

The information below is about J3_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8UXA|1|A|A|607
8UXA|1|A|A|608
8UXA|1|A|G|609
*
8UXA|1|A|C|623
8UXA|1|A|G|624
8UXA|1|A|A|625
8UXA|1|A|A|626
8UXA|1|A|C|627
*
8UXA|1|A|G|651
8UXA|1|A|A|652
8UXA|1|A|U|653
8UXA|1|A|U|654

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain B

Large ribosomal subunit protein uL2m