J3_8UXA_016
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUC*GUU*AUUAAAA
- Length
- 14 nucleotides
- Bulged bases
- 8UXA|1|A|U|2784, 8UXA|1|A|U|2785
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UXA_016 not in the Motif Atlas
- Geometric match to J3_4WF9_009
- Geometric discrepancy: 0.1831
- The information below is about J3_4WF9_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8UXA|1|A|U|2783
8UXA|1|A|U|2784
8UXA|1|A|U|2785
8UXA|1|A|C|2786
*
8UXA|1|A|G|2812
8UXA|1|A|U|2813
8UXA|1|A|U|2814
*
8UXA|1|A|A|2828
8UXA|1|A|U|2829
8UXA|1|A|U|2830
8UXA|1|A|A|2831
8UXA|1|A|A|2832
8UXA|1|A|A|2833
8UXA|1|A|A|2834
Current chains
- Chain A
- Large ribosomal subunit rRNA
Nearby chains
- Chain I
- Large ribosomal subunit protein uL14m
Coloring options: